Index

A

add_column() (data_source.DataSource static method) Alexandria3kError

Alexandria3kInternalError Asjcs (class in data_sources.asjcs)

B

BestIndex() (data_source.StreamingCachedContainerTable method) (data_source.StreamingTable method)

C

Close() (csv_source.CsvCursor method) (data_source.ElementsCursor method) (data_source.ItemsCursor method) (data_source.RecordsCursor method) Column() (csv_source.CsvCursor method) (data_source.ElementsCursor method) (data_source.RecordsCursor method) ColumnMeta (class in db_schema) common module Connect() (csv_source.VTSource method) container_id() (data_source.ElementsCursor method) (data_source.RecordsCursor method)

CONTAINER_ID_COLUMN (in module data_source) CONTAINER_INDEX (in module data_source) Create() (csv_source.VTSource method) Crossref (class in data_sources.crossref) csv_source module CsvCursor (class in csv_source) current_row_value() (data_source.ElementsCursor method) (data_source.ItemsCursor method) (data_source.RecordsCursor method) cursor() (data_source.StreamingTable method)

D

data_from_uri_provider() (in module common) data_source module Datacite (class in data_sources.datacite) DataFiles (class in data_source) DataSource (class in data_source) db_schema module

debug module debug_progress_bar() (data_source.FilesCursor method) Destroy() (data_source.StreamingTable method) Disconnect() (data_source.StreamingTable method) Doaj (class in data_sources.doaj) download() (data_source.DataSource method)

E

element_name() (data_source.NestedElementsCursor method) (data_source.RecordsCursor method) ElementsCursor (class in data_source) enabled() (in module debug) ensure_table_exists() (in module common)

ensure_unlinked() (in module common) Eof() (csv_source.CsvCursor method) (data_source.ElementsCursor method) (data_source.ItemsCursor method) (data_source.RecordsCursor method)

F

FilesCursor (class in data_source) Filter() (csv_source.CsvCursor method) (data_source.ElementsCursor method) (data_source.FilesCursor method) (data_source.RecordsCursor method)

FunderNames (class in data_sources.funder_names)

G

get_column_definition_by_name() (db_schema.TableMeta method) get_columns() (db_schema.TableMeta method) get_container_iterator() (csv_source.VTSource method) (data_source.DataFiles method) get_container_name() (csv_source.VTSource method) (data_source.DataFiles method) get_cursor_class() (db_schema.TableMeta method) get_data_source() (data_source.StreamingTable method) get_definition() (db_schema.ColumnMeta method) get_description() (db_schema.ColumnMeta method) get_extract_multiple() (db_schema.TableMeta method) get_file_array() (data_source.DataFiles method) get_foreign_key() (db_schema.TableMeta method) get_name() (db_schema.ColumnMeta method) (db_schema.TableMeta method)

get_parent_extract_multiple() (db_schema.TableMeta method) get_parent_name() (db_schema.TableMeta method) get_post_population_script() (db_schema.TableMeta method) get_primary_key() (db_schema.TableMeta method) get_query_column_names() (data_source.DataSource method) get_string_resource() (in module common) get_table_meta() (data_source.StreamingTable method) get_table_meta_by_name() (data_source.DataSource method) (data_source.StreamingTable method) get_value_extractor() (db_schema.ColumnMeta method) get_value_extractor_by_name() (db_schema.TableMeta method) get_value_extractor_by_ordinal() (data_source.StreamingTable method) (db_schema.TableMeta method) get_virtual_db() (data_source.DataSource method)

I

insert_statement() (db_schema.TableMeta method) is_unittest() (in module common)

is_url() (in module common) ItemsCursor (class in data_source)

J

JournalNames (class in data_sources.journal_names)

L

log() (in module debug) (in module perf)

log_sql() (in module common)

M

module common csv_source data_source db_schema debug perf xml

N

NestedElementsCursor (class in data_source) Next() (csv_source.CsvCursor method) (data_source.ElementsCursor method) (data_source.FilesCursor method) (data_source.NestedElementsCursor method) (data_source.RecordsCursor method)

O

Open() (data_source.StreamingTable method)

Orcid (class in data_sources.orcid)

P

perf module populate() (data_source.DataSource method) (data_sources.asjcs.Asjcs method) (data_sources.crossref.Crossref method) (data_sources.datacite.Datacite method) (data_sources.doaj.Doaj method) (data_sources.funder_names.FunderNames method) (data_sources.journal_names.JournalNames method) (data_sources.orcid.Orcid method) (data_sources.pubmed.Pubmed method) (data_sources.ror.Ror method) (data_sources.uspto.Uspto method)

process() (in module processes.link_aa_base_ror) (in module processes.link_aa_top_ror) (in module processes.link_uspto_doi) (in module processes.link_works_asjcs) program_version() (in module common) PROGRESS_BAR_LENGTH (in module data_source) Pubmed (class in data_sources.pubmed)

Q

query() (data_source.DataSource method) (data_sources.asjcs.Asjcs method) (data_sources.crossref.Crossref method) (data_sources.datacite.Datacite method) (data_sources.doaj.Doaj method) (data_sources.funder_names.FunderNames method) (data_sources.journal_names.JournalNames method) (data_sources.orcid.Orcid method) (data_sources.pubmed.Pubmed method) (data_sources.ror.Ror method) (data_sources.uspto.Uspto method)

query_result() (in module common)

R

record_id() (data_source.ElementsCursor method) RecordsCursor (class in data_source) remove_sqlite_comments() (in module common) Ror (class in data_sources.ror) Rowid() (csv_source.CsvCursor method) (data_source.ElementsCursor method) (data_source.ItemsCursor method) (data_source.RecordsCursor method)

ROWID_COLUMN (in module data_source) ROWID_INDEX (in module data_source)

S

sample() (data_source.StreamingTable method) set_fast_writing() (in module common) set_flags() (in module debug) set_output() (in module debug)

set_query_columns() (data_source.DataSource method) SINGLE_PARTITION_INDEX (in module data_source) StreamingCachedContainerTable (class in data_source) StreamingTable (class in data_source)

T

table_exists() (in module common) table_schema() (db_schema.TableMeta method)

TableMeta (class in db_schema) tables_transitive_closure() (data_source.DataSource method) try_sql_execute() (in module common)

U

Uspto (class in data_sources.uspto)

V

VTSource (class in csv_source)

W

warn() (in module common)

X

xml module